PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004736-PA
Common NameOsI_04303
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 223aa    MW: 24140.1 Da    PI: 6.4471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004736-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-105797954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       r RR+ri ++f  Lr+l+P        K++ +++Le+A++Y+k L
  BGIOSGA004736-PA 57 ARERRHRISDRFRVLRSLVPGG-----SKMETVSMLEQAIHYVKFL 97
                      699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9194897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1453116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1254108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1254103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-1354101No hitNo description
PfamPF000102.8E-75797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDPYHYENMH DPRGFPIHPQ PYHLHPTAGG LGEGRMRGGG RRRPGAKLST DPQSVAARER  60
RHRISDRFRV LRSLVPGGSK METVSMLEQA IHYVKFLKAQ VTLHQAALVQ HEEGCQHADV  120
AAAFAAADAD LALELNHRHG GAGDDDAGMT TLEMAPMQEA VGYGDGPAHQ MMQQALDPAG  180
QLMMGGAHQL PPLPCCVFVQ ETDPSCYSVC NVHGEESGAQ GSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618581.11e-156PREDICTED: transcription factor LAX PANICLE
SwissprotQ7XAQ61e-158LAX_ORYSJ; Transcription factor LAX PANICLE
TrEMBLA2WWM61e-164A2WWM6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA004736-PA1e-164(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.17e-26APRATAXIN-like